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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
77
ChIP-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
77
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
55
histone
55
histone modification
29
broad histone mark
26
narrow histone mark
16
transcription factor
12
control
RNA binding protein
Date released
670
February, 2021
403
August, 2017
369
November, 2017
318
August, 2021
314
October, 2019
296
May, 2020
241
May, 2021
214
June, 2019
168
July, 2018
115
May, 2019
108
July, 2019
106
February, 2023
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
60
November, 2019
56
March, 2020
49
April, 2018
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
140
bed narrowPeak
123
tsv
81
bigWig
64
xls
57
txt
49
bam
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
352
Homo sapiens
Biosample type
264
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
127
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
353
AMP
Genome assembly (visualization)
140
GRCh38
59
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
35
Patrick T. Ellinor, Broad
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
mammary gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
353 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
left cardiac atrium
18
35
heart left ventricle
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
17
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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