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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
38
ATAC-seq
34
ChIP-seq
2
snATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
52
Transcription
40
DNA accessibility
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
68
bed narrowPeak
59
fastq
58
bam
50
bigWig
30
bigBed narrowPeak
25
tsv
7
txt
1
bed bed3+
Organism
127
Homo sapiens
Biosample type
99
tissue
28
cell line
Organ
42
liver
27
blood
27
bodily fluid
26
pancreas
12
brain
7
spleen
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
127
AMP
Genome assembly (visualization)
69
hg19
30
GRCh38
Lab
63
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
2
audit script error
1
inconsistent control
1
inconsistent ontology term
BIOSAMPLE
ASSAY
127 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
single cell RNA-seq
tissue
liver
20
20
islet of Langerhans
6
18
1
spleen
7
skeletal muscle tissue
1
1
Ammon's horn
1
+ See 24 more…
cell line
GM12878
27
HepG2
1
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