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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92ATAC-seq
  • 12total RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 92DNA accessibility
  • 13Transcription
Date released
  • 670February, 2021
  • 411August, 2017
  • 406November, 2017
  • 319August, 2021
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 218June, 2019
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 106February, 2023
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 61November, 2019
  • 57March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 5March, 2019
  • 4August, 2018
  • 3June, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 65bed narrowPeak
  • 16tsv
  • 10bed bed3
  • 7txt
  • 4bed bed3+
  • 3bed bedgraph
  • 3bigWig
Organism
  • 105Homo sapiens
Biosample type
  • 77tissue
  • 16in vitro differentiated cells
  • 12primary cell
  • 1cell line
Organ
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • 15epithelium
  • 14connective tissue
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
  • 1pancreas
Project
  • 106AMP
  • 76HPAP
  • 23T1D
Genome assembly (visualization)
  • 45hg19
  • 35GRCh38
Lab
  • 103AMP-T2D consortium
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 11inconsistent ontology term
BIOSAMPLE
ASSAY

106 results

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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery35
retina152
pigmented layer of retina122
acetabular part of hip bone11
ilium11
in vitro differentiated cells
chondrocyte5
immature adipocyte22
adipocyte11
preadipocyte11
Progenitor cell of Hypothalamus (neural progenitor cell)1
primary cell
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
cell line
EndoC_BH11
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