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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
35
total RNA-seq
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
57
DNA binding
36
Transcription
16
DNA accessibility
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
9
control
6
RNA binding protein
6
chromatin remodeller
5
nucleotide modification
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
108
bam
103
bigWig
103
fastq
69
bed narrowPeak
36
bigBed narrowPeak
35
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
Organism
119
Homo sapiens
Biosample type
79
primary cell
29
cell line
11
tissue
Organ
82
pancreas
67
epithelium
18
blood
18
bodily fluid
7
spleen
6
connective tissue
5
liver
Project
119
AMP
Genome assembly (visualization)
104
GRCh38
104
hg19
Lab
109
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
DNase-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 2 more…
cell line
GM12878
18
EndoC_BH1
6
HepG2
5
tissue
spleen
7
islet of Langerhans
4
See all biosamples
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