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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
12
WGBS
11
RRBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
59
Transcription
23
DNA methylation
8
3D chromatin structure
7
DNA accessibility
Target of assay
3
control
Date released
662
February, 2021
411
August, 2017
406
November, 2017
296
May, 2020
284
October, 2019
246
May, 2021
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
106
February, 2023
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
April, 2019
55
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
11
September, 2017
8
January, 2018
7
December, 2019
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
78
bigWig
75
bam
59
tsv
19
bed bedMethyl
19
bigBed bedMethyl
6
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
97
Homo sapiens
Biosample type
73
tissue
24
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
97
AMP
Genome assembly (visualization)
80
hg19
73
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 16 more…
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