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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
11
Hi-C
11
total RNA-seq
8
ATAC-seq
Assay category
11
3D chromatin structure
11
Transcription
8
DNA accessibility
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
June, 2018
1
August, 2022
1
October, 2022
Available data
43
tsv
15
bigWig
12
bam
12
bedpe bed3+
11
hic
2
ibed
1
bed broadPeak
1
bedpe
1
fastq
Organism
62
Homo sapiens
Biosample type
41
tissue
8
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
12
pancreas
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
epithelium
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
62
AMP
7
T1D
Genome assembly (visualization)
30
hg19
13
GRCh38
Lab
57
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
14
inconsistent ontology term
month_released!
June, 2018
BIOSAMPLE
ASSAY
62 results
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Clear Filters
pCHi-C
Hi-C
total RNA-seq
ATAC-seq
tissue
islet of Langerhans
1
6
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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