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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
24
total RNA-seq
10
MeRIP-seq
3
ChIP-seq
2
Hi-C
1
DNase-seq
Assay category
28
DNA accessibility
24
Transcription
3
DNA binding
2
3D chromatin structure
Target of assay
10
histone
histone modification
7
control
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
670
February, 2021
318
November, 2017
299
August, 2021
269
May, 2020
212
August, 2017
199
June, 2019
191
May, 2021
168
July, 2018
118
October, 2019
108
July, 2019
106
February, 2023
88
November, 2018
66
May, 2022
63
December, 2017
57
March, 2020
51
November, 2019
49
April, 2018
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
16
November, 2020
15
May, 2023
11
October, 2017
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
May, 2024
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
55
bam
29
bed narrowPeak
26
bigWig
24
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
67
Homo sapiens
Biosample type
44
tissue
12
cell line
6
primary cell
5
in vitro differentiated cells
Organ
55
pancreas
12
epithelium
7
connective tissue
1
adipose tissue
Project
67
AMP
Genome assembly (visualization)
55
hg19
53
GRCh38
Lab
57
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
18
inconsistent ontology term
month_released!
September, 2017
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
ChIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
6
3
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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