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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1569ChIP-seq
  • 995total RNA-seq
  • 379ATAC-seq
  • 204DNase-seq
  • 148single cell RNA-seq
  • 87RNA microarray
  • 39pCHi-C
  • 24Hi-C
  • 24WGBS
  • 19RRBS
  • 16small RNA-seq
  • 8snATAC-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 1569DNA binding
  • 1159Transcription
  • 594DNA accessibility
  • 44DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Target of assay
  • 782histone modification
  • 781histone
  • 495transcription factor
  • 401narrow histone mark
  • 379broad histone mark
  • 290control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 644February, 2021
  • 406November, 2017
  • 315August, 2021
  • 296May, 2020
  • 296October, 2019
  • 223August, 2017
  • 214June, 2019
  • 186May, 2021
  • 118May, 2019
  • 105February, 2023
  • 102July, 2019
  • 94December, 2017
  • 81November, 2018
  • 80April, 2019
  • 50March, 2020
  • 42May, 2022
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24February, 2020
  • 23October, 2018
  • 18October, 2017
  • 15May, 2023
  • 11July, 2018
  • 10April, 2018
  • 10December, 2019
  • 8January, 2018
  • 6November, 2019
  • 6November, 2020
  • 2June, 2018
  • 1August, 2018
  • 1July, 2025
  • 1October, 2022
  • 1September, 2018
Available data
  • 2523bam
  • 2366bigWig
  • 1519bed narrowPeak
  • 1088tsv
  • 951bigBed narrowPeak
  • 787fastq
  • 301bed broadPeak
  • 295tagAlign
  • 278bigBed broadPeak
  • 245bed bed3+
  • 155txt
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 3530Homo sapiens
Biosample type
  • 2206tissue
  • 563cell line
  • 391in vitro differentiated cells
  • 365primary cell
  • 8stem cell
Organ
  • 791liver
  • pancreas
  • 683connective tissue
  • 491adipose tissue
  • 393heart
  • 368epithelium
  • 307kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 158bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3533AMP
  • 210T1D
  • 172HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 2375hg19
  • 2312GRCh38
  • 5hg18
Lab
  • 3187AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 82Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 34Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 267inconsistent ontology term
  • 28inconsistent control
  • 11audit script error
  • 1inconsistent replicate
Audit category:
  • 35missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

3533 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
WGBS
RRBS
small RNA-seq
snATAC-seq
GRO-seq
STARR-seq
FAIRE-seq
snDrop-seq
Capture-C
DNAme array
MPRA
whole genome sequencing assay
tissue
adipose tissue2382313
liver145167202111311
kidney27497513171161
bone element84
heart left ventricle35323181141
cell line
HepG237814122121
smooth muscle cell of the coronary artery6528
GM12878601
H1-hESC8
RCC 7860 HIF1a re-expression41
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
primary cell
CD8-positive, alpha-beta T cell3322
naive thymus-derived CD4-positive, alpha-beta T cell2122
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
skeletal muscle myoblast15121
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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