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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
36
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
116
DNA binding
45
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
chromatin remodeller
Date released
69
October, 2019
32
June, 2019
25
December, 2018
13
November, 2018
12
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
164
bam
136
bed narrowPeak
136
bigWig
128
bigBed narrowPeak
50
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
173
Homo sapiens
Biosample type
122
tissue
51
cell line
Organ
768
liver
760
pancreas
681
connective tissue
491
adipose tissue
393
heart
367
epithelium
307
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
173
AMP
8
T1D
Genome assembly (visualization)
141
hg19
140
GRCh38
Lab
173
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
cell line
GM12878
50
1
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