Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 28candidate regulatory elements
  • 16target gene predictions
  • 15chromatin state
  • 12binding sites
  • 5histone modifications
  • 4accessible chromatin
  • 1variant allelic effects
Date released
  • 42September, 2022
  • 28February, 2021
  • 4June, 2020
  • 3October, 2022
  • 2May, 2021
  • 1August, 2017
  • 1February, 2024
Available data
  • 67bed bed3+
  • 14bed bed9
Organism
  • 81Homo sapiens
Collection Tags
  • 42EpiMap
  • 18ChIP-Atlas
  • 17ENCODE
  • 3DGA
Biosample type
  • 40primary cell
  • 36cell line
  • 3in vitro differentiated cells
  • 2tissue
Organ
  • 2869vasculature
  • 2859bodily fluid
  • 2848blood
  • 2823blood vessel
  • 2658vein
  • 647epithelium
  • 509kidney
  • 467brain
  • 402connective tissue
  • 369musculature of body
  • 299lung
  • 270intestine
  • 247heart
  • 244limb
  • 237pancreas
  • 213embryo
  • 194skin of body
  • 168large intestine
  • 158liver
  • 143extraembryonic component
  • 110stomach
  • 105eye
  • 99adipose tissue
  • 86bone element
  • 81mammary gland
  • 81uterus
  • 80small intestine
  • 78prostate gland
  • 74artery
  • 71placenta
  • 64penis
  • 64ureter
  • 63adrenal gland
  • 62lymph node
  • 48gonad
  • 48thymus
  • 43spinal cord
  • 41esophagus
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphoid tissue
  • 21ovary
  • 21thyroid gland
  • 19mouth
  • 18skeleton
  • 15lymphatic vessel
  • 13breast
  • 13bronchus
  • 13pituitary gland
  • 10bone marrow
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 81AMP
  • 6ENCODE
Genome assembly (visualization)
  • 81hg19
  • 14GRCh38
BIOSAMPLE
TYPE

81 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
accessible chromatin
variant allelic effects
primary cell
mammary gland epithelial cell33311
mammary epithelial cell31141
fibroblast of mammary gland211211
myoepithelial cell of mammary gland422
luminal epithelial cell of mammary gland111
cell line
MCF-7965321
T47D322
MCF 10A3
in vitro differentiated cells
mammary gland epithelial cell111
tissue
mammary gland11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego