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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1783ChIP-seq
  • 471ATAC-seq
  • 212DNase-seq
  • 40pCHi-C
  • 30Hi-C
  • 28WGBS
  • 23total RNA-seq
  • 21RRBS
  • 8snATAC-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3single cell RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 1783DNA binding
  • 696DNA accessibility
  • 50DNA methylation
  • 303D chromatin structure
  • 26Transcription
  • 1DNA sequencing
Target of assay
  • 929histone modification
  • 928histone
  • 514transcription factor
  • 470narrow histone mark
  • 457broad histone mark
  • 338control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 322August, 2017
  • 288October, 2019
  • 218June, 2019
  • 151May, 2020
  • 134August, 2021
  • 120May, 2019
  • 115May, 2021
  • 94December, 2017
  • 93February, 2023
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 59July, 2019
  • 46March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 39May, 2022
  • 35December, 2018
  • 33February, 2021
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 11May, 2023
  • 11September, 2017
  • 8January, 2018
  • 5March, 2019
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 1924bam
  • 1729bed narrowPeak
  • 1695bigWig
  • 1042bigBed narrowPeak
  • 949fastq
  • 322bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 71tsv
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 5txt
  • 4tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2628Homo sapiens
Biosample type
  • 1427tissue
  • 534cell line
  • 413primary cell
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 601liver
  • 333pancreas
  • 265brain
  • 231heart
  • 226kidney
  • 220epithelium
  • 208connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 61blood
  • 61bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12bone element
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2638AMP
  • 184T1D
  • 147HPAP
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1745hg19
  • 1653GRCh38
  • 5hg18
Lab
  • 2369AMP-T2D consortium
  • 93Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 120inconsistent ontology term
  • 28inconsistent control
  • 3audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

2638 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
WGBS
total RNA-seq
RRBS
snATAC-seq
FAIRE-seq
GRO-seq
Capture-C
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
RNA microarray
whole genome sequencing assay
tissue
liver1452021131
islet of Langerhans6957143111
kidney2775131161
heart left ventricle35231141
body of pancreas35442
cell line
HepG2378122151
GM12878601
EndoC_BH11319121
Panc11311
smooth muscle cell of the coronary artery68
primary cell
CD8-positive, alpha-beta T cell332
naive thymus-derived CD4-positive, alpha-beta T cell222
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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