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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 705ChIP-seq
  • 184ATAC-seq
  • 168total RNA-seq
  • 95single cell RNA-seq
  • 49DNase-seq
  • 32pCHi-C
  • 19RRBS
  • 15Hi-C
  • 11small RNA-seq
  • 10MeRIP-seq
  • 5snATAC-seq
  • 4FAIRE-seq
  • 4STARR-seq
  • 2Capture-C
  • 2WGBS
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 705DNA binding
  • 274Transcription
  • 242DNA accessibility
  • 22DNA methylation
  • 153D chromatin structure
Target of assay
  • 420transcription factor
  • 211histone
  • 211histone modification
  • 122narrow histone mark
  • 89broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 77control
  • 32chromatin remodeller
  • 5nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 124October, 2019
  • 103May, 2020
  • 66August, 2021
  • 64November, 2018
  • 62December, 2017
  • 62June, 2019
  • 61May, 2021
  • 60July, 2019
  • 56August, 2017
  • 45July, 2018
  • 41March, 2020
  • 39April, 2018
  • 37February, 2021
  • 32February, 2023
  • 28December, 2018
  • 25February, 2020
  • 24November, 2019
  • 21January, 2019
  • 14May, 2019
  • 10November, 2020
  • 8October, 2018
  • 7December, 2019
  • 7October, 2017
  • 5March, 2019
  • 3August, 2018
  • 2April, 2019
  • 2May, 2022
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1September, 2018
Available data
  • 1043bam
  • 962bigWig
  • 678bed narrowPeak
  • 624fastq
  • 529bigBed narrowPeak
  • 299tsv
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 96tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 10bedpe bed3+
  • 8hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1308Homo sapiens
Biosample type
  • 456cell line
  • 338primary cell
  • 327tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 426liver
  • 163pancreas
  • 156epithelium
  • 96brain
  • 67connective tissue
  • 58kidney
  • 56blood
  • 56bodily fluid
  • 49vasculature
  • 44blood vessel
  • 41heart
  • 22musculature of body
  • 19vein
  • 17adipose tissue
  • 13embryo
  • 11artery
  • 8bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1308AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 1039hg19
  • 887GRCh38
Lab
  • 1253AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 125inconsistent ontology term
  • 28inconsistent control
  • 3audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1308 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
MeRIP-seq
snATAC-seq
FAIRE-seq
STARR-seq
Capture-C
WGBS
snDrop-seq
DNAme array
cell line
HepG2335152121
GM1287856
Panc11111
EndoC_BH126
H1-hESC8
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
skeletal muscle myoblast15121
pancreatic beta cell111
tissue
islet of Langerhans2026361124
liver4231111
brain111121
heart531411
kidney12141
in vitro differentiated cells
neural progenitor cell21107
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1191
adipocyte78111
hepatocyte15
stem cell
hESC3
mesenchymal stem cell1
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