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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 572ChIP-seq
  • 90ATAC-seq
  • 49total RNA-seq
  • 22DNase-seq
  • 19RRBS
  • 10Hi-C
  • 8pCHi-C
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 4snATAC-seq
  • 2WGBS
  • 1FAIRE-seq
Assay category
  • 572DNA binding
  • 117DNA accessibility
  • 55Transcription
  • 21DNA methylation
  • 103D chromatin structure
Target of assay
  • 387transcription factor
  • 126histone
  • 126histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 61narrow histone mark
  • 60control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 74October, 2019
  • 62November, 2018
  • 59December, 2017
  • 56May, 2020
  • 32June, 2019
  • 28December, 2018
  • 26February, 2021
  • 24July, 2019
  • 23August, 2017
  • 23November, 2019
  • 21January, 2019
  • 18August, 2021
  • 14May, 2019
  • 13March, 2020
  • 7December, 2019
  • 7October, 2018
  • 6November, 2020
  • 3February, 2023
  • 1April, 2019
  • 1July, 2018
Available data
  • 672bam
  • 607bigWig
  • 553bed narrowPeak
  • 495fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 61tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 793Homo sapiens
Biosample type
  • 456cell line
  • 156primary cell
  • 107tissue
  • 71in vitro differentiated cells
  • 3stem cell
Organ
  • 410liver
  • 78epithelium
  • 56blood
  • 56bodily fluid
  • 50pancreas
  • 42vasculature
  • 39kidney
  • 37blood vessel
  • 25brain
  • 18vein
  • 16heart
  • 13musculature of body
  • 11embryo
  • 10connective tissue
  • 7artery
  • 5limb
  • 4eye
  • 1mammary gland
  • 1pericardium
Project
  • 793AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 660hg19
  • 573GRCh38
Lab
  • 774AMP-T2D consortium
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 78inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

793 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
pCHi-C
MeRIP-seq
single cell RNA-seq
STARR-seq
snATAC-seq
WGBS
FAIRE-seq
cell line
HepG2335151221
GM1287856
Panc11111
EndoC_BH126
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15121
endothelial cell of umbilical vein1611
macrophage11
tissue
liver3611
islet of Langerhans191
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12212
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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