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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1162total RNA-seq
  • 1078ChIP-seq
  • 287ATAC-seq
  • 163DNase-seq
  • 133single cell RNA-seq
  • 87RNA microarray
  • 26WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 3snATAC-seq
  • 2Capture-C
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1302Transcription
  • 1078DNA binding
  • 454DNA accessibility
  • 28DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Target of assay
  • 718histone modification
  • 717histone
  • 368broad histone mark
  • 348narrow histone mark
  • 266control
  • 94transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 633February, 2021
  • 355August, 2017
  • 253August, 2021
  • 193May, 2020
  • 190October, 2019
  • 185May, 2021
  • 156June, 2019
  • 123July, 2018
  • 111November, 2017
  • 106May, 2019
  • 78April, 2019
  • 74February, 2023
  • 72September, 2018
  • 68October, 2018
  • 64May, 2022
  • 48July, 2019
  • 40May, 2024
  • 38February, 2018
  • 37November, 2019
  • 32December, 2017
  • 24November, 2018
  • 16March, 2020
  • 16October, 2017
  • 15May, 2023
  • 10April, 2018
  • 9January, 2019
  • 9September, 2017
  • 8January, 2018
  • 7December, 2018
  • 6November, 2020
  • 3December, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 2163bam
  • 2011bigWig
  • 1197tsv
  • 1051bed narrowPeak
  • 565fastq
  • 513bigBed narrowPeak
  • 218tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 2974Homo sapiens
Biosample type
  • 2353tissue
  • 221primary cell
  • 211in vitro differentiated cells
  • 195cell line
  • 4stem cell
Organ
  • 616connective tissue
  • 597pancreas
  • 474adipose tissue
  • 365liver
  • 352heart
  • 249kidney
  • 212epithelium
  • 190brain
  • 187vasculature
  • 186blood vessel
  • 150bone element
  • 130artery
  • 114limb
  • 74musculature of body
  • 54eye
  • 42nerve
  • 24embryo
  • 24spleen
  • 18ureter
  • 8skeleton
  • 5blood
  • 5bodily fluid
  • 4gonad
  • 4ovary
  • 3vein
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 2984AMP
  • 315HPAP
  • 83T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 2043GRCh38
  • 1985hg19
  • 5hg18
Lab
  • 2651AMP-T2D consortium
  • 138Katalin Susztak, Upenn
  • 87Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 28Bing Ren, UCSD
Audit category:
  • 219inconsistent ontology term
  • 9audit script error
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2984 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
Hi-C
pCHi-C
small RNA-seq
GRO-seq
snATAC-seq
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
MPRA
STARR-seq
snDrop-seq
whole genome sequencing assay
tissue
adipose tissue382213
islet of Langerhans28249311411
liver164103201311
kidney492675111712
bone element84
primary cell
CD8-positive, alpha-beta T cell233
pancreatic alpha cell101361
pancreatic beta cell101271
pancreatic endocrine cell23
pancreatic ductal cell41341
in vitro differentiated cells
adipocyte460
cardiomyocytes473
embryonic stem cell2291
pancreatic endoderm4151
definitive endodermal cell251
cell line
EndoC_BH1311317121
smooth muscle cell of the coronary artery5248
HepG294311
GM1287841
Panc12
stem cell
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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