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Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2638pQTL
  • 1218target gene predictions
  • 977histone modifications
  • 944chromatin state
  • 871candidate regulatory elements
  • 817binding sites
  • 643accessible chromatin
  • 518gene expression
  • 184eQTL
  • 140variant allelic effects
  • 84Fine-mapped variants
  • 53differential activity
  • 11caQTL
  • 5hQTL
  • 5sQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2639February, 2025
  • 2511September, 2022
  • 1753February, 2021
  • 389May, 2021
  • 376February, 2024
  • 289June, 2020
  • 155May, 2020
  • 128March, 2020
  • 123August, 2021
  • 106January, 2022
  • 99October, 2022
  • 89January, 2020
  • 64February, 2020
  • 61March, 2023
  • 49May, 2022
  • 44November, 2022
  • 38March, 2025
  • 38May, 2024
  • 35August, 2017
  • 31February, 2023
  • 30March, 2024
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 5September, 2023
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 4833bed bed3+
  • 3293tsv
  • 869bed bed9
  • 277bigWig
  • 108txt
  • 40bigBed bed9
  • 34bed bed9+
  • 24csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 9072Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 645DGA
  • 362T1D
  • 219BLUEPRINT
  • 195AMP
  • 1744DN
  • 151GTEx
  • 146 T2DKP
  • 128ENCODE
  • 111T2D
  • 101eQTLCatalogue
  • 91CMDGA
  • 68T2DKP
  • 67HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 4840tissue
  • 2195cell line
  • 1653primary cell
  • 426in vitro differentiated cells
  • 4stem cell
Organ
  • 2843vasculature
  • 2837bodily fluid
  • 2828blood
  • 2803blood vessel
  • 2654vein
  • 595epithelium
  • 425kidney
  • 416brain
  • 362connective tissue
  • 291musculature of body
  • 238lung
  • 226pancreas
  • 213heart
  • 212intestine
  • 196limb
  • 183embryo
  • 153skin of body
  • 149liver
  • 132large intestine
  • 117extraembryonic component
  • 96eye
  • 88adipose tissue
  • 82stomach
  • 76uterus
  • 75bone element
  • 70artery
  • 67mammary gland
  • 64prostate gland
  • 62small intestine
  • 58placenta
  • 49adrenal gland
  • 49lymph node
  • 46penis
  • 46ureter
  • 39gonad
  • 39thymus
  • 35spinal cord
  • 31esophagus
  • 25spleen
  • 22nerve
  • 21testis
  • 20lymphoid tissue
  • 17ovary
  • 17skeleton
  • 17thyroid gland
  • 15mouth
  • 13lymphatic vessel
  • 13pituitary gland
  • 11bronchus
  • 10breast
  • 9bone marrow
  • 9urinary bladder
  • 8tongue
  • 8vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9119AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 5749hg19
  • 1573GRCh38
  • 4hg18
software_used.software.name!
  • encode-ccres
BIOSAMPLE
TYPE

9119 results

search-icontable-tab-icon
Clear Filters
pQTL
target gene predictions
histone modifications
chromatin state
candidate regulatory elements
binding sites
accessible chromatin
gene expression
eQTL
variant allelic effects
Fine-mapped variants
differential activity
caQTL
hQTL
sQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart20121191532
kidney1421614110711
stomach2111919311
brain163181612121
cell line
HeLa-S355331
A549191181821
H1-hESC39111218
K5622317621
MCF-7625531
primary cell
monocyte186117154211
common myeloid progenitor, CD34-positive141313
CD8-positive, alpha-beta T cell330123
B cell1081122
hepatocyte241217132
in vitro differentiated cells
neural progenitor cell51544107
hematopoietic multipotent progenitor cell1011010111
adipocyte6162141
embryonic stem cell11516
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
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