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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
88
ChIP-seq
21
ATAC-seq
21
single cell RNA-seq
17
pCHi-C
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
218
Transcription
88
DNA binding
31
DNA accessibility
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
99
February, 2023
February, 2021
45
May, 2020
40
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
3
October, 2022
Available data
196
bigWig
186
bam
zippedFastqFolder
124
fastq
98
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
362
Homo sapiens
Biosample type
322
primary cell
31
tissue
9
cell line
Organ
100
pancreas
70
epithelium
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3561
AMP
236
T1D
126
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
228
Kyle Gaulton, UCSD
126
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
3
audit script error
files.file_type!
zippedFastqFolder
month_released!
February, 2021
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
362 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
7
1
exocrine cell
39
Langerhans cell
21
pancreatic beta cell
11
3
1
+ See 35 more…
tissue
islet of Langerhans
7
2
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
See all biosamples
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