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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
60
DNA accessibility
55
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
18
September, 2020
4
March, 2023
3
October, 2022
Available data
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
155
Homo sapiens
Biosample type
155
primary cell
2
cell line
2
stem cell
Organ
83
epithelium
83
pancreas
Project
2548
AMP
244
T1D
155
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
Lab
155
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
Audit category:
3
audit script error
files.file_type!
fastq
organ_slims!
liver
vasculature
BIOSAMPLE
ASSAY
159 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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