Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
88
ChIP-seq
47
single cell RNA-seq
17
pCHi-C
16
snATAC-seq
Assay category
147
Transcription
88
DNA binding
16
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
47
September, 2023
45
May, 2020
February, 2023
16
January, 2021
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
268
Homo sapiens
Biosample type
204
primary cell
60
tissue
4
cell line
Organ
47
kidney
16
pancreas
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4181
AMP
248
HPAP
221
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
213
Kyle Gaulton, UCSD
47
KPMP
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
tagAlign bed3+
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2023
BIOSAMPLE
ASSAY
268 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
kidney
47
islet of Langerhans
2
2
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
See all biosamples
Download