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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
114
Transcription
88
DNA binding
39
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
262
Homo sapiens
Biosample type
204
primary cell
50
tissue
9
cell line
Organ
34
pancreas
19
lung
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4246
AMP
324
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
236
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
bigBed bedMethyl
month_released!
December, 2019
BIOSAMPLE
ASSAY
263 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
9
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
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