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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
snATAC-seq
11
ATAC-seq
9
single cell RNA-seq
9
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
Assay category
39
DNA accessibility
18
Transcription
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
7
March, 2020
Available data
5
bam
5
bigWig
3
bed narrowPeak
2
tsv
Organism
64
Homo sapiens
Biosample type
49
tissue
8
cell line
8
primary cell
Organ
33
pancreas
19
lung
8
blood
8
bodily fluid
3
epithelium
Project
3750
AMP
324
HPAP
47
KPMP
46
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
39
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
7
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
May, 2020
May, 2021
BIOSAMPLE
ASSAY
65 results
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snATAC-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
tissue
islet of Langerhans
6
11
7
2
lung
10
9
pancreas
4
cell line
EndoC_BH1
2
3
1
2
primary cell
peripheral blood mononuclear cell
8
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