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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
88
ChIP-seq
17
pCHi-C
16
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
104
Transcription
88
DNA binding
16
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
45
May, 2020
February, 2023
16
January, 2021
7
March, 2020
4
March, 2023
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
221
Homo sapiens
Biosample type
204
primary cell
13
tissue
6
cell line
2
stem cell
Organ
16
pancreas
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
4181
AMP
248
HPAP
221
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
213
Kyle Gaulton, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
9
inconsistent ontology term
files.file_type!
tagAlign bed3+
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2023
BIOSAMPLE
ASSAY
225 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
2
2
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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