Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
2
ChIP-seq
Assay category
103
Transcription
29
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
45
May, 2020
18
February, 2023
16
January, 2021
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
tagAlign
Organism
151
Homo sapiens
Biosample type
120
primary cell
31
tissue
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3327
AMP
321
HPAP
151
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
147
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bedpe bed3+
tagAlign
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
151 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
ChIP-seq
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
6
11
2
pancreas
4
thymus
1
See all biosamples
Download