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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
44
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
Assay category
103
Transcription
44
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
narrow histone mark
Date released
112
May, 2021
45
May, 2020
18
February, 2023
16
January, 2021
2
March, 2020
Available data
140
bam
140
bigWig
96
tsv
44
bed narrowPeak
44
tagAlign
Organism
193
Homo sapiens
Biosample type
164
primary cell
29
tissue
cell line
Organ
28
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2861
AMP
324
HPAP
193
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
140
GRCh38
140
hg19
Lab
191
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
lab.title!
Karen Mohlke, UNC
organ_slims!
heart
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
193 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
primary cell
monocyte
53
44
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
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