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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
42
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
Assay category
103
Transcription
42
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
108
May, 2021
45
May, 2020
18
February, 2023
16
January, 2021
4
March, 2020
Available data
138
bam
138
bigWig
96
tsv
42
bed narrowPeak
40
tagAlign
Organism
191
Homo sapiens
Biosample type
160
primary cell
31
tissue
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3203
AMP
324
HPAP
191
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
138
GRCh38
138
hg19
Lab
187
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
target.investigated_as!
broad histone mark
recombinant protein
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
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