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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 98total RNA-seq
  • 86ChIP-seq
  • 16pCHi-C
  • 8snATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 98Transcription
  • 86DNA binding
  • 8DNA accessibility
Target of assay
  • 86histone
  • 86histone modification
  • 44broad histone mark
  • 42narrow histone mark
Date released
  • 152May, 2021
  • 45May, 2020
  • 8January, 2021
  • 5February, 2023
  • 3March, 2020
Available data
  • 184bam
  • 184bigWig
  • 98tsv
  • 86bed narrowPeak
  • 84tagAlign
Organism
  • 213Homo sapiens
Biosample type
  • 204primary cell
  • tissue
  • 9cell line
Organ
  • 8blood
  • 8bodily fluid
  • 4epithelium
  • 4pancreas
  • 1bone element
  • 1bone marrow
  • 1connective tissue
Project
  • 1612AMP
  • 324HPAP
  • 213T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 184GRCh38
  • 184hg19
Lab
  • 209Kyle Gaulton, UCSD
  • 4AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

213 results

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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte53841
peripheral blood mononuclear cell8
B cell21
CD8-positive, alpha-beta T cell21
naive B cel21
cell line
EndoC_BH12232
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