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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
21
DNA accessibility
7
Transcription
Date released
23
February, 2023
17
May, 2021
8
January, 2021
2
March, 2020
Available data
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
50
Homo sapiens
Biosample type
29
tissue
16
primary cell
5
cell line
Organ
28
pancreas
8
blood
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
1081
AMP
324
HPAP
50
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Lab
48
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
month_released!
January, 2019
March, 2019
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
50 results
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pCHi-C
ATAC-seq
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
11
6
7
pancreas
4
thymus
1
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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cell line
EndoC_BH1
3
2
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