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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
86
ChIP-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
103
Transcription
86
DNA binding
13
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
45
May, 2020
23
February, 2023
January, 2021
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
Organism
224
Homo sapiens
Biosample type
196
primary cell
23
tissue
5
cell line
Organ
26
pancreas
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3894
AMP
224
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
182
GRCh38
182
hg19
Lab
220
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
January, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
2
11
2
thymus
1
cell line
EndoC_BH1
3
2
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