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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
ChIP-seq
2
HiChIP
Assay category
103
Transcription
29
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
138
bam
138
bigWig
96
tsv
42
bed narrowPeak
tagAlign
Organism
156
Homo sapiens
Biosample type
120
primary cell
31
tissue
5
cell line
Organ
34
pancreas
8
blood
8
bodily fluid
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3276
AMP
172
HPAP
156
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
152
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
bigBed bedMethyl
tagAlign
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
6
11
2
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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