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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
7
total RNA-seq
4
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
29
DNA accessibility
7
Transcription
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
23
February, 2023
18
May, 2021
16
January, 2021
5
March, 2020
Available data
186
bam
186
bigWig
tsv
88
bed narrowPeak
tagAlign
Organism
62
Homo sapiens
Biosample type
31
tissue
24
primary cell
7
cell line
Organ
32
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2255
AMP
318
HPAP
62
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
56
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
tsv
txt
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
62 results
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snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
7
2
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
2
3
2
See all biosamples
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