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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
44
ChIP-seq
17
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
96
Transcription
44
DNA binding
8
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
narrow histone mark
Date released
112
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
140
bam
140
bigWig
96
tsv
44
bed narrowPeak
44
tagAlign
Organism
170
Homo sapiens
Biosample type
164
primary cell
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3091
AMP
172
HPAP
170
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
140
GRCh38
140
hg19
Lab
170
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
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cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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