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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
18
snATAC-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
Assay category
54
Transcription
29
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
7
March, 2020
Available data
50
bam
50
bigWig
47
tsv
3
bed narrowPeak
Organism
91
Homo sapiens
Biosample type
53
primary cell
30
tissue
8
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
3
epithelium
Project
3895
AMP
324
HPAP
91
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
84
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
May, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
islet of Langerhans
7
6
11
2
pancreas
4
cell line
EndoC_BH1
2
3
1
2
See all biosamples
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