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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 60total RNA-seq
  • 18snATAC-seq
  • 17pCHi-C
  • 11ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 88DNA binding
  • 60Transcription
  • 29DNA accessibility
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 153May, 2021
  • May, 2020
  • 23February, 2023
  • 16January, 2021
  • 7March, 2020
Available data
  • 141bam
  • 141bigWig
  • 88bed narrowPeak
  • 84tagAlign
  • 53tsv
Organism
  • 199Homo sapiens
Biosample type
  • 159primary cell
  • 31tissue
  • 9cell line
Organ
  • 34pancreas
  • 8blood
  • 8bodily fluid
  • 4epithelium
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 3996AMP
  • 324HPAP
  • 199T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 141GRCh38
  • 141hg19
Lab
  • 191Kyle Gaulton, UCSD
  • 8AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
month_released!
  • May, 2020
BIOSAMPLE
ASSAY

199 results

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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte84511
peripheral blood mononuclear cell8
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
tissue
islet of Langerhans27611
pancreas4
thymus1
cell line
EndoC_BH12232
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