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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 45total RNA-seq
  • 18snATAC-seq
  • 17pCHi-C
  • 11ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 88DNA binding
  • 45Transcription
  • 29DNA accessibility
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 102May, 2021
  • 45May, 2020
  • 18February, 2023
  • 16January, 2021
  • 3March, 2020
Available data
  • 133bam
  • 133bigWig
  • 88bed narrowPeak
  • 84tagAlign
  • 45tsv
Organism
  • 184Homo sapiens
Biosample type
  • 153primary cell
  • 24tissue
  • 7cell line
Organ
  • 25pancreas
  • 8blood
  • 8bodily fluid
  • 2epithelium
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 2638AMP
  • 184T1D
  • 147HPAP
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 133GRCh38
  • 133hg19
Lab
  • 180Kyle Gaulton, UCSD
  • 4AMP-T2D consortium
Audit category:
  • 7inconsistent ontology term
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

184 results

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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte8421
peripheral blood mononuclear cell8
B cell21
CD8-positive, alpha-beta T cell21
naive B cel21
tissue
islet of Langerhans2611
pancreas4
thymus1
cell line
EndoC_BH1232
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