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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
45
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
88
DNA binding
45
Transcription
29
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
45
May, 2020
18
February, 2023
16
January, 2021
3
March, 2020
Available data
133
bam
133
bigWig
88
bed narrowPeak
84
tagAlign
45
tsv
Organism
184
Homo sapiens
Biosample type
153
primary cell
24
tissue
7
cell line
Organ
25
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2638
AMP
184
T1D
147
HPAP
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
133
GRCh38
133
hg19
Lab
180
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
RNA
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
2
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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