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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
34
total RNA-seq
14
snATAC-seq
13
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
40
DNA binding
34
Transcription
14
DNA accessibility
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
Date released
80
May, 2021
14
January, 2021
5
February, 2023
4
May, 2020
3
March, 2020
Available data
74
bam
74
bigWig
40
bed narrowPeak
38
tagAlign
34
tsv
Organism
106
Homo sapiens
Biosample type
88
primary cell
9
cell line
9
tissue
Organ
12
pancreas
6
blood
6
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3777
AMP
321
HPAP
106
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
102
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
replication_type!
anisogenic
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
38
28
1
peripheral blood mononuclear cell
6
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
2
2
3
2
tissue
islet of Langerhans
4
pancreas
4
thymus
1
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