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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
50
ChIP-seq
17
pCHi-C
11
ATAC-seq
7
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
Assay category
73
Transcription
50
DNA binding
18
DNA accessibility
Target of assay
50
histone
50
histone modification
31
narrow histone mark
19
broad histone mark
Date released
87
May, 2021
41
May, 2020
21
February, 2023
7
March, 2020
5
January, 2021
Available data
116
bam
116
bigWig
66
tsv
50
bed narrowPeak
46
tagAlign
Organism
161
Homo sapiens
Biosample type
128
primary cell
26
tissue
7
cell line
Organ
29
pancreas
4
epithelium
2
blood
2
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
1308
AMP
161
T1D
9
HPAP
1
ITG
Genome assembly (visualization)
116
GRCh38
116
hg19
Lab
153
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
replication_type!
unreplicated
BIOSAMPLE
ASSAY
161 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte
25
46
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 27 more…
tissue
islet of Langerhans
7
2
11
3
pancreas
2
thymus
1
cell line
EndoC_BH1
2
2
3
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