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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 245total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 86ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 7Hi-C
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
Assay category
  • 399Transcription
  • 224DNA accessibility
  • 86DNA binding
  • 47DNA methylation
  • 73D chromatin structure
Target of assay
  • 86histone
  • 86histone modification
  • 44broad histone mark
  • 42narrow histone mark
Date released
  • 152May, 2021
  • 134August, 2021
  • 134May, 2022
  • 97February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 4March, 2020
  • 3March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1October, 2017
Available data
  • 198bigWig
  • 182bam
  • 170fastq
  • 154bed narrowPeak
  • 153zippedFastqFolder
  • 103tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 6hic
  • 4bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
Organism
  • 779Homo sapiens
Biosample type
  • 529primary cell
  • 244tissue
  • cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 189kidney
  • 187pancreas
  • 152epithelium
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 324HPAP
  • 235T1D
  • 154AMP
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 270GRCh38
  • 196hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 231Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4AMP-T2D consortium
  • 4Bing Ren, UCSD
  • 2Anna Gloyn, Oxford
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 6inconsistent ontology term
award.rfa!
  • AMP
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

782 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
tissue
kidney49587561
islet of Langerhans813262
lung910
pancreas4
thymus1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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