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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
11
total RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
DNA binding
13
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
5
histone
5
histone modification
4
control
4
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
5
February, 2023
3
March, 2020
2
March, 2023
1
May, 2021
Available data
18
bigWig
16
bed narrowPeak
11
tsv
4
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
43
Homo sapiens
Biosample type
529
primary cell
244
tissue
45
cell line
7
in vitro differentiated cells
2
stem cell
Organ
31
liver
4
epithelium
4
pancreas
2
kidney
Project
34
AMP
9
T1D
2
community
Genome assembly (visualization)
19
hg19
4
GRCh38
Lab
34
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
5
inconsistent ontology term
award.rfa!
AMP
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
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