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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 188total RNA-seq
  • 85single cell RNA-seq
  • 84ChIP-seq
  • 56snATAC-seq
  • 49ATAC-seq
  • 47WGBS
  • 16pCHi-C
  • 4Hi-C
Assay category
  • 273Transcription
  • 105DNA accessibility
  • 84DNA binding
  • 47DNA methylation
  • 43D chromatin structure
Target of assay
  • 84histone
  • 84histone modification
  • 44broad histone mark
  • 40narrow histone mark
Date released
  • 151May, 2021
  • 134May, 2022
  • 76February, 2023
  • 59September, 2020
  • 45February, 2021
  • 45May, 2020
  • 8January, 2021
  • 7August, 2020
  • 3October, 2022
  • 1March, 2023
Available data
  • 190bigWig
  • 180bam
  • 169fastq
  • 153zippedFastqFolder
  • 102tsv
  • 84bed narrowPeak
  • 84tagAlign
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 529Homo sapiens
Biosample type
  • 529primary cell
  • 244tissue
  • 45cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 152epithelium
  • 152pancreas
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
Project
  • 324HPAP
  • 204T1D
  • 1ITG
Genome assembly (visualization)
  • 191GRCh38
  • 183hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 204Kyle Gaulton, UCSD
  • 1ITG
Audit category:
  • 30audit script error
  • 5inconsistent ontology term
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529 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
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