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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ATAC-seq
  • 67single cell RNA-seq
  • 57total RNA-seq
  • 27snATAC-seq
  • 3Hi-C
  • 2ChIP-seq
  • 1pCHi-C
Assay category
  • 124Transcription
  • 115DNA accessibility
  • 33D chromatin structure
  • 2DNA binding
Target of assay
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 130August, 2021
  • 47September, 2023
  • 19April, 2020
  • 18February, 2023
  • 14May, 2023
  • 8January, 2021
  • 4March, 2020
  • 2March, 2019
  • 1July, 2025
  • 1May, 2021
  • 1October, 2017
Available data
  • 66bed narrowPeak
  • 64xls
  • 57txt
  • 3bigWig
  • 2bam
  • 2hic
  • 2tsv
  • 1bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1bedpe bed3+
  • 1fastq
  • 1tbi
Organism
  • 243Homo sapiens
Biosample type
  • 529primary cell
  • 245tissue
  • 45cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 189kidney
  • 35pancreas
  • 19lung
  • 1musculature of body
  • 1thymus
Project
  • 148AMP
  • 47KPMP
  • 31T1D
  • 19LungMap
Genome assembly (visualization)
  • 80GRCh38
  • 6hg19
Lab
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 27Kyle Gaulton, UCSD
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Bing Ren, UCSD
  • 2Stephen Parker, UMich
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

245 results

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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
ChIP-seq
pCHi-C
tissue
kidney75584961
islet of Langerhans138622
lung910
pancreas4
skeletal muscle tissue1
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