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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 158total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 82snATAC-seq
  • 47WGBS
  • 18ChIP-seq
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 314Transcription
  • 224DNA accessibility
  • 47DNA methylation
  • 18DNA binding
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 168August, 2021
  • 134May, 2022
  • 102February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 19April, 2020
  • 17May, 2021
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 2March, 2020
  • 1October, 2017
Available data
  • 216bigWig
  • bam
  • 170bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • 114tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 636Homo sapiens
Biosample type
  • 349primary cell
  • 242tissue
  • 41cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 185pancreas
  • 152epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 324HPAP
  • 188AMP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 88GRCh38
  • 29hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 56Kyle Gaulton, UCSD
  • 47KPMP
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2AMP-T2D consortium
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 3inconsistent ontology term
award.rfa!
  • AMP
files.file_type!
  • bam
BIOSAMPLE
ASSAY

641 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
peripheral blood mononuclear cell8
tissue
kidney49587561
islet of Langerhans81362
lung910
pancreas4
thymus1
cell line
HepG2918121
EndoC_BH132
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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