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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 83snATAC-seq
  • 74ATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 4ChIP-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 412Transcription
  • 157DNA accessibility
  • 47DNA methylation
  • 83D chromatin structure
  • 4DNA binding
  • 1DNA sequencing
Target of assay
  • 4control
Date released
  • 134May, 2022
  • 100February, 2023
  • 88August, 2021
  • 68May, 2021
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 5March, 2023
  • 4March, 2020
  • 3October, 2022
  • 2March, 2019
  • 1July, 2025
  • 1October, 2017
Available data
  • 216bigWig
  • 186bam
  • bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • 115tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bed3+
  • 3bed bedgraph
  • 3cool
  • 1bed broadPeak
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 652Homo sapiens
Biosample type
  • 445primary cell
  • 179tissue
  • 29cell line
  • 3in vitro differentiated cells
  • 2stem cell
Organ
  • 187pancreas
  • 154epithelium
  • 127kidney
  • 19lung
  • 17liver
  • 8blood
  • 8bodily fluid
  • 3connective tissue
  • 1bone element
  • 1bone marrow
  • 1musculature of body
  • 1thymus
Project
  • 324HPAP
  • 156T1D
  • 107AMP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 123GRCh38
  • 109hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 152Kyle Gaulton, UCSD
  • 78Katalin Susztak, Upenn
  • 47KPMP
  • 24Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
  • 2Stephen Parker, UMich
  • 1ITG
Audit category:
  • 30audit script error
  • 8inconsistent ontology term
award.rfa!
  • AMP
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

658 results

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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell4229311
monocyte531
pancreatic beta cell1116161
exocrine cell39
tissue
kidney49586111
islet of Langerhans86132
lung910
pancreas4
skeletal muscle tissue1
cell line
HepG291241
EndoC_BH1232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
adipocyte1
osteoblast1
stem cell
SB Ad3.111
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