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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 158total RNA-seq
  • 152single cell RNA-seq
  • 126ATAC-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 4ChIP-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 314Transcription
  • 208DNA accessibility
  • 47DNA methylation
  • 83D chromatin structure
  • 4DNA binding
  • 1DNA sequencing
Target of assay
  • 4control
Date released
  • 152August, 2021
  • 134May, 2022
  • 99February, 2023
  • 56September, 2020
  • 47September, 2023
  • 45February, 2021
  • 19April, 2020
  • 17May, 2021
  • 16January, 2021
  • 14May, 2023
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 2March, 2020
Available data
  • bigWig
  • 186bam
  • 170bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • 114tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 606Homo sapiens
Biosample type
  • 339primary cell
  • 241tissue
  • 27cell line
  • 2in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 174pancreas
  • 142epithelium
  • 19lung
  • 17liver
  • 8blood
  • 8bodily fluid
  • 3connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 314HPAP
  • 168AMP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 77GRCh38
  • 9hg19
Lab
  • 314Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 56Kyle Gaulton, UCSD
  • 47KPMP
  • 24Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 30audit script error
  • 2inconsistent ontology term
award.rfa!
  • AMP
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

611 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell4222311
pancreatic beta cell1113161
exocrine cell39
peripheral blood mononuclear cell8
tissue
kidney49587561
islet of Langerhans81262
lung910
pancreas4
thymus1
cell line
HepG291241
EndoC_BH132
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte1
osteoblast1
stem cell
SB Ad3.111
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