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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 164total RNA-seq
  • 131ATAC-seq
  • 118single cell RNA-seq
  • 106ChIP-seq
  • 56snATAC-seq
  • 41WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 286Transcription
  • 187DNA accessibility
  • 106DNA binding
  • 41DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 168August, 2021
  • 153May, 2021
  • 134May, 2022
  • 47September, 2023
  • 45May, 2020
  • 26February, 2023
  • 19April, 2020
  • 18September, 2020
  • 16January, 2021
  • 14May, 2023
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1July, 2025
Available data
  • 216bigWig
  • 186bam
  • 170bed narrowPeak
  • fastq
  • 153zippedFastqFolder
  • 115tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bed3+
  • 3bed bedgraph
  • 3cool
  • 1bed broadPeak
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 652Homo sapiens
Biosample type
  • 360primary cell
  • 244tissue
  • 45cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 121pancreas
  • 87epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1musculature of body
  • 1thymus
Project
  • 244T1D
  • 188AMP
  • 155HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 264GRCh38
  • 214hg19
Lab
  • 236Kyle Gaulton, UCSD
  • 155Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 11inconsistent ontology term
  • 3audit script error
award.rfa!
  • AMP
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

658 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell5121
pancreatic alpha cell22251
pancreatic beta cell13161
peripheral blood mononuclear cell8
tissue
kidney49755861
islet of Langerhans812262
lung910
pancreas4
skeletal muscle tissue1
cell line
HepG2918121
EndoC_BH12232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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