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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1Hi-C
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 412Transcription
  • 224DNA accessibility
  • 106DNA binding
  • 47DNA methylation
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 166August, 2021
  • 153May, 2021
  • 134May, 2022
  • 102February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 7March, 2020
  • 4March, 2023
  • 1March, 2019
  • 1October, 2017
Available data
  • 216bigWig
  • 186bam
  • 170bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • 114tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 815Homo sapiens
Biosample type
  • 525primary cell
  • 242tissue
  • 44cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 190kidney
  • 187pancreas
  • 153epithelium
  • 30liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 321HPAP
  • 244T1D
  • 185AMP
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 273GRCh38
  • 209hg19
Lab
  • 321Klaus Kaestner, Upenn
  • 236Kyle Gaulton, UCSD
  • 141Katalin Susztak, Upenn
  • 47KPMP
  • 36Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 11inconsistent ontology term
award.rfa!
  • AMP
files.file_type!
  • hic
BIOSAMPLE
ASSAY

820 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell422931
pancreatic beta cell111616
exocrine cell39
tissue
kidney4958756
islet of Langerhans813261
lung910
pancreas4
thymus1
cell line
HepG291821
EndoC_BH12232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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