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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 152single cell RNA-seq
  • 148total RNA-seq
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 41WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 304Transcription
  • 224DNA accessibility
  • 106DNA binding
  • 41DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 158August, 2021
  • 134May, 2022
  • 102February, 2023
  • 102May, 2021
  • 59September, 2020
  • 47September, 2023
  • 39February, 2021
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 5March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1October, 2017
Available data
  • 216bigWig
  • 186bam
  • 170bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 708Homo sapiens
Biosample type
  • 427primary cell
  • 243tissue
  • 34cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 182pancreas
  • 148epithelium
  • 22liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 318HPAP
  • 178AMP
  • 146T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 176GRCh38
  • 117hg19
Lab
  • 318Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 140Kyle Gaulton, UCSD
  • 47KPMP
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 6AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 5inconsistent ontology term
award.rfa!
  • AMP
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

713 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell4229251
monocyte841
pancreatic beta cell1116161
exocrine cell39
tissue
kidney58497561
islet of Langerhans713262
lung910
pancreas4
thymus1
cell line
HepG218121
EndoC_BH1232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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