Experiment Matrix – Common Metabolic Diseases Genome Atlas

Experiment Matrix

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BIOSAMPLE

	ASSAY
674 results Clear Filters	total RNA-seq	ChIP-seq	ATAC-seq	single cell RNA-seq	snATAC-seq	pCHi-C	Hi-C	WGBS	STARR-seq	CRISPR genome editing followed by DNA sequencing	Capture-C	HiChIP	CRISPR RNA-seq	CRISPRi RNA-seq	shRNA RNA-seq	siRNA RNA-seq	whole genome sequencing assay
primary cell
monocyte	53	84				1
Langerhans cell				33	27
pancreatic alpha cell	42		7				1	6
exocrine cell	39
pancreatic beta cell	11		3				1
peripheral blood mononuclear cell					8
B cell	2					1
CD8-positive, alpha-beta T cell	2					1
naive B cel	2					1
naive thymus-derived CD8-positive, alpha-beta T cell	2					1
CD4-positive, alpha-beta T cell						2
T follicular helper cell	2
T-helper 1 cell	2
T-helper 17 cell	2
T-helper 2 cell	2
central memory CD8-positive, alpha-beta T cell	2
effector CD4-positive, alpha-beta T cell	2
effector T cell	2
effector memory CD8-positive, alpha-beta T cell	2
gamma-delta T cell	2
mature natural killer cell	2
memory B cell	2
memory T cell	2
memory regulatory T cell	2
naive regulatory T cell	2
regulatory T cell	2
activated CD4-positive, alpha-beta T cell						1
adult endothelial progenitor cell						1
alternatively activated macrophage						1
chondrocytes							1
erythroblast						1
immature natural killer cell	1
inflammatory macrophage						1
macrophage						1
megakaryocyte						1
myeloid dendritic cell	1
naive thymus-derived CD4-positive, alpha-beta T cell						1
natural killer cell	1
neutrophil						1
pancreatic acinar cell							1
plasma cell	1
plasmacytoid dendritic cell	1
tissue
kidney	49		75	58	6		1
islet of Langerhans	8	2	13		6		2
lung				9	10
pancreas					4
thymus						1
cell line
HepG2	9	18					1		2								1
EndoC_BH1	2	2								3		2
EndoC-BH1															1	1
HEK293T									2
Synthesized DNA									1
in vitro differentiated cells
adipocyte			1								1
osteoblast			1								1
Progenitor cell of Hypothalamus (neural progenitor cell)			1
embryonic stem cell			1
neuron cell of Hypothalamus (neuron)			1
stem cell
SB Ad3.1													1	1