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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 68ATAC-seq
Assay category
  • 102DNA binding
  • 68DNA accessibility
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 1RNA binding protein
Date released
  • 85May, 2021
  • 80August, 2021
  • 3March, 2020
  • 2February, 2023
Available data
  • 216bigWig
  • 186bam
  • 170bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • 114tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 170Homo sapiens
Biosample type
  • 84primary cell
  • 66tissue
  • 16cell line
  • 4in vitro differentiated cells
Organ
  • 64kidney
  • 14liver
  • 4pancreas
  • 2connective tissue
  • 2epithelium
Project
  • 88T1D
  • 82AMP
Genome assembly (visualization)
  • 152GRCh38
  • 106hg19
Lab
  • 84Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 14Bing Ren, UCSD
  • 4AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

170 results

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Clear Filters
ChIP-seq
ATAC-seq
primary cell
monocyte84
tissue
kidney64
islet of Langerhans2
cell line
HepG214
EndoC_BH12
in vitro differentiated cells
adipocyte1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
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