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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 102ChIP-seq
  • 98total RNA-seq
  • 16ATAC-seq
Assay category
  • 102DNA binding
  • 98Transcription
  • 16DNA accessibility
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 1RNA binding protein
Date released
  • 136May, 2021
  • 45May, 2020
  • 16August, 2021
  • 7August, 2020
  • 5March, 2020
  • 3February, 2023
  • 3September, 2020
  • 1October, 2017
Available data
  • 216bigWig
  • 186bam
  • 170bed narrowPeak
  • 170fastq
  • 153zippedFastqFolder
  • 115tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bed3+
  • 3bed bedgraph
  • 3cool
  • 1bed broadPeak
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 216Homo sapiens
Biosample type
  • 190primary cell
  • 18cell line
  • 5in vitro differentiated cells
  • 3tissue
Organ
  • 17pancreas
  • 14epithelium
  • 14liver
  • 2connective tissue
Project
  • 186T1D
  • 20AMP
  • 10HPAP
Genome assembly (visualization)
  • 206hg19
  • 197GRCh38
Lab
  • 180Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
  • 10Klaus Kaestner, Upenn
  • 6AMP-T2D consortium
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 9inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

216 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
primary cell
monocyte8453
pancreatic alpha cell7
pancreatic beta cell3
B cell2
CD8-positive, alpha-beta T cell2
cell line
HepG214
EndoC_BH122
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
adipocyte1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
tissue
islet of Langerhans21
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