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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 180total RNA-seq
  • 130ATAC-seq
  • 106ChIP-seq
  • 106single cell RNA-seq
  • 45snATAC-seq
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 290Transcription
  • 175DNA accessibility
  • 106DNA binding
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 168August, 2021
  • 153May, 2021
  • 58September, 2020
  • 47September, 2023
  • 45May, 2020
  • 27May, 2022
  • 26February, 2023
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 11February, 2021
  • 7August, 2020
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1October, 2017
Available data
  • 216bigWig
  • 186bam
  • 170bed narrowPeak
  • 108tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 59fastq
  • 46zippedFastqFolder
  • 7hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 604Homo sapiens
Biosample type
  • 311primary cell
  • 244tissue
  • 45cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 95pancreas
  • 60epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 244T1D
  • 188AMP
  • 106HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 274GRCh38
  • 215hg19
Lab
  • 236Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 106Klaus Kaestner, Upenn
  • 47KPMP
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 14audit script error
  • 11inconsistent ontology term
award.rfa!
  • AMP
files.platform.term_name!
  • Illumina NovaSeq 6000
BIOSAMPLE
ASSAY

609 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell3911
pancreatic alpha cell15231
pancreatic beta cell1131
peripheral blood mononuclear cell8
tissue
kidney49755861
islet of Langerhans813262
lung910
pancreas4
thymus1
cell line
HepG2918121
EndoC_BH12232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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