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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 155total RNA-seq
  • 152single cell RNA-seq
  • 131ATAC-seq
  • 65snATAC-seq
  • 47WGBS
  • 22ChIP-seq
  • 8Hi-C
  • 5STARR-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 311Transcription
  • 196DNA accessibility
  • 47DNA methylation
  • 22DNA binding
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 7histone
  • 7histone modification
  • 6narrow histone mark
  • 4control
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 168August, 2021
  • 134May, 2022
  • 79February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 19April, 2020
  • 14May, 2023
  • 7August, 2020
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1July, 2025
  • 1May, 2021
  • 1October, 2017
Available data
  • 170fastq
  • 153zippedFastqFolder
  • 86bed narrowPeak
  • 64xls
  • 60txt
  • 36bigWig
  • 19tsv
  • 7hic
  • 6bam
  • 5bedpe bed3+
  • 3bed bed3+
  • 3bed bedgraph
  • 3cool
  • 1bed broadPeak
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 586Homo sapiens
Biosample type
  • 325primary cell
  • 218tissue
  • 40cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 165pancreas
  • 156epithelium
  • 31liver
  • 19lung
  • 4connective tissue
  • 1musculature of body
Project
  • 324HPAP
  • 189AMP
  • 47KPMP
  • 19LungMap
  • 8T1D
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 95GRCh38
  • 35hg19
Lab
  • 324Klaus Kaestner, Upenn
  • Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Stephen Parker, UMich
  • 1ITG
Audit category:
  • 30audit script error
  • 6inconsistent ontology term
award.rfa!
  • AMP
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

592 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
STARR-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
pancreatic acinar cell41
tissue
kidney49587561
lung910
islet of Langerhans3222
skeletal muscle tissue1
cell line
HepG2918121
EndoC_BH122
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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